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pyCyto 0.1.0
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pyCyto 0.1.0

Start Here

  • Introduction to pyCyto
  • Environment Setup

User Guide

  • Architecture
  • pyCyto Analysis Pipeline
  • Interface Guide
  • DataOps Storage Layout
  • Containerized Execution System
  • Figure Gallery

Operator Guide

  • Operator Guide
  • Cluster Jupyter Setup Guide
  • Benchmark — Horizontal Scaling Performance

Developer Guide

  • Developer Guide
  • Module Template & API Contract
  • Compute Node Model
  • Plugin Integration Guide
  • Docker to Apptainer Conversion
  • Docker → Apptainer Migration
  • Boilerplate Templates
  • TrackMate CSV Importer
  • TrackMate Python Class in Memory Processing

API Reference

  • API Reference
    • cyto.preprocessing
    • cyto.segmentation
    • cyto.tracking
    • cyto.postprocessing
    • cyto.utils
    • cyto.runners
    • cyto.tasks

Archive

  • Legacy & Archive
  • UTSE Cytotoxicity Archive Audit (2026-03-11)
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Copyright © 2025, Jacky Ka Long Ko, Veronika Pfannenstill, Samuel Alber
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