cyto.preprocessing

Modules for normalising, filtering, and correcting raw microscopy images before segmentation.

class cyto.preprocessing.normalization.GammaCorrection(gamma=1.0, gain=1, verbose=True)

Bases: object

class cyto.preprocessing.normalization.PercentileNormalization(lp=5, up=95, verbose=True)

Bases: object

class cyto.preprocessing.cross_channel_correlation.CrossChannelCorrelation(mode='SLICE', scale=1024000000.0, method='MEAN', verbose=False)

Bases: object

cyto.preprocessing.cross_channel_correlation.pixelwise_correlation(img1, img2, method='MEAN', scale=1024000000.0)